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  5. Pp1s41_270V6

Pp1s41_270V6


Description : zinc finger (c3hc4-type ring finger) family protein


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s41_270V6
Cluster HCCA clusters: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
A4A49_18667 No alias ring-h2 finger protein atl18 0.01 Orthogroups_2024-Update
A4A49_39617 No alias ring-h2 finger protein atl1 0.03 Orthogroups_2024-Update
At1g20823 No alias RING-H2 finger protein ATL80... 0.02 Orthogroups_2024-Update
At1g49210 No alias E3 ubiquitin-protein ligase ATL76... 0.1 Orthogroups_2024-Update
At2g35910 No alias RING-H2 finger protein ATL70... 0.02 Orthogroups_2024-Update
At3g03550 No alias Uncharacterized protein At3g03550... 0.01 Orthogroups_2024-Update
At3g05200 No alias E3 ubiquitin-protein ligase ATL6... 0.02 Orthogroups_2024-Update
At3g14320 No alias Putative RING-H2 finger protein ATL61... 0.02 Orthogroups_2024-Update
At3g16720 No alias RING-H2 finger protein ATL2... 0.02 Orthogroups_2024-Update
At4g09100 No alias RING-H2 finger protein ATL39... 0.02 Orthogroups_2024-Update
At5g05280 No alias RING-H2 finger protein ATL73... 0.02 Orthogroups_2024-Update
At5g27420 No alias E3 ubiquitin-protein ligase ATL31... 0.03 Orthogroups_2024-Update
Bradi1g46750 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.B00007.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Brara.B02021.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.B02994.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C01887.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.D02790.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.E00038.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E01533.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Brara.E02690.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E03386.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.F00385.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H01260.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.H02311.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.I02588.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.07 Orthogroups_2024-Update
Glyma.04G215600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G177000 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G156500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G121400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G042300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G108500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G178400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G157400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G028400 No alias TOXICOS EN LEVADURA 2 0.02 Orthogroups_2024-Update
Glyma.18G060500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G099800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G053130.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G065420.2 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g11460 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os02g15080 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os06g16060 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os06g34650 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g40460 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10436208g0010 No alias (at1g72200 : 100.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update
MA_129306g0010 No alias (at5g42200 : 80.1) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update
MA_308999g0010 No alias (at1g72310 : 80.9) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
Potri.001G032300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.001G162000 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.001G309600 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.001G400600 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G101800 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.005G244800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.008G054200 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G010500 No alias TOXICOS EN LEVADURA 2 0.02 Orthogroups_2024-Update
Potri.010G243500 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.016G067900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.019G010500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Pp1s71_162V6 No alias ring finger 0.01 Orthogroups_2024-Update
Seita.2G037300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.006G193000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.008G030200.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc03g112340 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G05200.1) 0.03 Orthogroups_2024-Update
Solyc08g076830 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc11g005300 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G49230.1) 0.04 Orthogroups_2024-Update
Sopen01g035300 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen01g048080 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen04g029750 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen11g001300 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen11g001320 No alias Ring finger domain 0.02 Orthogroups_2024-Update
evm.model.contig_606.5 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 109 152
No external refs found!