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  5. Pp1s42_128V6

Pp1s42_128V6


Description : e3 ubiquitin protein ligase


Gene families : OG_42_0001888 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s42_128V6
Cluster HCCA clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
154179 No alias ubiquitin-protein ligase 1 0.04 Orthogroups_2024-Update
At1g70320 No alias E3 ubiquitin-protein ligase UPL2... 0.03 Orthogroups_2024-Update
Bradi4g07997 No alias ubiquitin-protein ligase 1 0.11 Orthogroups_2024-Update
GRMZM2G331368 No alias ubiquitin-protein ligase 1 0.02 Orthogroups_2024-Update
GRMZM2G411536 No alias ubiquitin-protein ligase 2 0.02 Orthogroups_2024-Update
Glyma.02G216000 No alias ubiquitin-protein ligase 1 0.04 Orthogroups_2024-Update
Glyma.04G096900 No alias ubiquitin-protein ligase 1 0.05 Orthogroups_2024-Update
Glyma.05G133100 No alias ubiquitin-protein ligase 1 0.05 Orthogroups_2024-Update
Glyma.06G098700 No alias ubiquitin-protein ligase 1 0.04 Orthogroups_2024-Update
Glyma.08G087600 No alias ubiquitin-protein ligase 1 0.05 Orthogroups_2024-Update
Glyma.14G183000 No alias ubiquitin-protein ligase 2 0.08 Orthogroups_2024-Update
HORVU5Hr1G033930.8 No alias E3 ubiquitin ligase *(UPL1) 0.05 Orthogroups_2024-Update
Kfl00780_0030 kfl00780_0030_v1.1 (at1g55860 : 726.0) encodes a ubiquitin-protein ligase... 0.05 Orthogroups_2024-Update
LOC_Os09g07900 No alias ubiquitin-protein ligase 1, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os12g24080 No alias HECT-domain domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_20049g0010 No alias (at1g55860 : 1461.0) encodes a ubiquitin-protein ligase... 0.04 Orthogroups_2024-Update
MA_7295g0020 No alias (at1g70320 : 866.0) encodes a ubiquitin-protein... 0.04 Orthogroups_2024-Update
PSME_00024428-RA No alias (at1g55860 : 1240.0) encodes a ubiquitin-protein ligase... 0.02 Orthogroups_2024-Update
Potri.001G368600 No alias ubiquitin-protein ligase 1 0.05 Orthogroups_2024-Update
Potri.002G110500 No alias ubiquitin-protein ligase 2 0.03 Orthogroups_2024-Update
Seita.3G302600.1 No alias E3 ubiquitin ligase *(UPL1) 0.05 Orthogroups_2024-Update
Sobic.002G147600.1 No alias E3 ubiquitin ligase *(UPL1) 0.04 Orthogroups_2024-Update
Sobic.008G092600.1 No alias E3 ubiquitin ligase *(UPL1) 0.07 Orthogroups_2024-Update
Solyc04g076620 No alias E3 ubiquitin-protein ligase UPL1-like protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen04g030340 No alias HECT-domain (ubiquitin-transferase) 0.02 Orthogroups_2024-Update
Sopen07g033840 No alias Domain of Unknown Function (DUF913) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006906 vesicle fusion IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016050 vesicle organization IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Predicted GO
BP GO:0048284 organelle fusion IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0061025 membrane fusion IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0090174 organelle membrane fusion IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR015940 UBA 1319 1356
IPR025527 DUF4414 2807 2838
IPR025527 DUF4414 2728 2756
IPR025527 DUF4414 2767 2798
IPR010314 E3_Ub_ligase_DUF913 429 805
IPR010309 E3_Ub_ligase_DUF908 208 368
IPR010309 E3_Ub_ligase_DUF908 90 212
No external refs found!