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  5. Pp1s43_228V6

Pp1s43_228V6


Description : nucleic acid binding


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s43_228V6
Cluster HCCA clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
At1g25250 No alias IDD16 [Source:UniProtKB/TrEMBL;Acc:A0A178WG74] 0.04 Orthogroups_2024-Update
At5g60470 No alias C2H2 and C2HC zinc fingers superfamily protein... 0.03 Orthogroups_2024-Update
Brara.B02622.1 No alias C2H2 subclass IDD transcription factor 0.02 Orthogroups_2024-Update
Brara.B02772.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Brara.I02048.1 No alias C2H2 subclass IDD transcription factor 0.02 Orthogroups_2024-Update
Glyma.10G029700 No alias indeterminate(ID)-domain 12 0.04 Orthogroups_2024-Update
Glyma.12G070300 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Glyma.16G141100 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G064740.2 No alias C2H2 subclass IDD transcription factor 0.02 Orthogroups_2024-Update
LOC_Os02g45054 No alias ZOS2-15 - C2H2 zinc finger protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os03g10140 No alias ZOS3-04 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
MA_10428315g0010 No alias (at1g34370 : 211.0) Encodes a putative nuclear... 0.03 Orthogroups_2024-Update
MA_12028g0010 No alias (at2g01940 : 315.0) May be involved in an early event in... 0.05 Orthogroups_2024-Update
Mp1g15660.1 No alias C2H2 zinc finger transcription factor 0.02 Orthogroups_2024-Update
PSME_00007148-RA No alias (at3g50700 : 335.0) zinc finger protein, similar to... 0.02 Orthogroups_2024-Update
Seita.7G201000.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G242900.1 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
Solyc05g054030 No alias Zinc finger family protein (AHRD V3.3 *** B9HJL4_POPTR) 0.03 Orthogroups_2024-Update
Sopen07g027520 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen11g027970 No alias Zinc finger, C2H2 type 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR013087 Znf_C2H2_type 86 108
No external refs found!