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  5. Pp1s460_19V6

Pp1s460_19V6


Description : zinc finger


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s460_19V6
Cluster HCCA clusters: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
96681 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
A4A49_10444 No alias e3 ubiquitin-protein ligase atl9 0.02 Orthogroups_2024-Update
At2g47560 No alias RING-H2 finger protein ATL64... 0.03 Orthogroups_2024-Update
At3g62690 No alias RING-H2 zinc finger protein ATL5... 0.02 Orthogroups_2024-Update
Bradi1g46750 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.A00287.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.E00038.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
GRMZM2G041344 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G480106 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G215500 No alias AtL5 0.03 Orthogroups_2024-Update
Glyma.09G140800 No alias carbon/nitrogen insensitive 1 0.02 Orthogroups_2024-Update
Glyma.16G014600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G028260.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
LOC_Os02g45390 No alias RING-H2 finger protein, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os04g37740 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g48310 No alias RING-H2 finger protein, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os05g29710 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g34650 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g02350 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10426834g0010 No alias (at1g49230 : 115.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_25345g0010 No alias (at1g49230 : 107.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_6931619g0010 No alias (at1g49230 : 106.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_895676g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00042839-RA No alias (at4g35480 : 80.9) Encodes a putative RING-H2 finger... 0.02 Orthogroups_2024-Update
Seita.2G037300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g109200 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061DYT2_THECC) 0.02 Orthogroups_2024-Update
Solyc03g112340 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G05200.1) 0.03 Orthogroups_2024-Update
Sopen01g040370 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen02g016820 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen12g024180 No alias Ring finger domain 0.03 Orthogroups_2024-Update
evm.model.contig_2281.4 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 115 158
No external refs found!