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  5. Pp1s46_212V6

Pp1s46_212V6


Description : 60s ribosomal protein l38


Gene families : OG_42_0001927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001927_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Physcomitrella release: Pp1s46_212V6
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
A4A49_59471 No alias 60s ribosomal protein l38 0.03 Orthogroups_2024-Update
Bradi1g25302 No alias Ribosomal L38e protein family 0.02 Orthogroups_2024-Update
Brara.E00357.1 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Glyma.08G100000 No alias Ribosomal L38e protein family 0.06 Orthogroups_2024-Update
Kfl00433_0040 kfl00433_0040_v1.1 (at3g59540 : 122.0) Ribosomal L38e protein family;... 0.02 Orthogroups_2024-Update
LOC_Os11g24610 No alias 60S ribosomal protein L38, putative, expressed 0.02 Orthogroups_2024-Update
MA_20588g0010 No alias (at3g59540 : 129.0) Ribosomal L38e protein family;... 0.02 Orthogroups_2024-Update
PSME_00035421-RA No alias (at3g59540 : 127.0) Ribosomal L38e protein family;... 0.02 Orthogroups_2024-Update
Pp1s67_172V6 No alias 60s ribosomal protein l38 0.06 Orthogroups_2024-Update
Seita.2G274700.1 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Seita.6G231700.1 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.007G184600.2 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sopen05g034080 No alias Ribosomal L38e protein family 0.03 Orthogroups_2024-Update
evm.model.tig00021719.6 No alias (at3g59540 : 110.0) Ribosomal L38e protein family;... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002675 Ribosomal_L38e 2 68
No external refs found!