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  5. Solyc01g099990

Solyc01g099990


Description : F-box protein (AHRD V3.3 *** G7KWK0_MEDTR)


Gene families : OG_42_0000141 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000141_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g099990
Cluster HCCA clusters: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
A4A49_31344 No alias f-box protein 0.03 Orthogroups_2024-Update
At2g02280 No alias Putative protein PHLOEM PROTEIN 2-LIKE B4... 0.03 Orthogroups_2024-Update
LOC_Os02g56760 No alias OsFBX66 - F-box domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.005G022100 No alias F-box family protein 0.03 Orthogroups_2024-Update
Potri.006G266900 No alias F-box family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0017003 protein-heme linkage IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 7 52
IPR025886 PP2-like 101 286
No external refs found!