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  5. Pp1s51_78V6

Pp1s51_78V6


Description : vacuolar protein sorting 39


Gene families : OG_42_0005241 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005241_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s51_78V6
Cluster HCCA clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
Bradi1g10697 No alias Vacuolar sorting protein 39 0.02 Orthogroups_2024-Update
Seita.9G116000.1 No alias HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016556 mRNA modification IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0080009 mRNA methylation IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001180 CNH_dom 65 279
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 508 618
IPR000547 Clathrin_H-chain/VPS_repeat 634 771
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 897 1004
No external refs found!