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  5. Solyc12g008700

Solyc12g008700


Description : peroxisomal ABC transporter 1 (AHRD V3.3 --* AT4G39850.4)


Gene families : OG_42_0002853 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g008700
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
227173 No alias Ribosomal protein S30 family protein 0.06 Orthogroups_2024-Update
At2g19750 No alias 40S ribosomal protein S30... 0.06 Orthogroups_2024-Update
At4g29390 No alias 40S ribosomal protein S30... 0.09 Orthogroups_2024-Update
Bradi1g48060 No alias Ribosomal protein S30 family protein 0.05 Orthogroups_2024-Update
Brara.A00791.1 No alias component *(eS30) of small ribosomal-subunit (SSU) proteome 0.24 Orthogroups_2024-Update
Brara.C01230.1 No alias component *(eS30) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Brara.I04721.1 No alias component *(eS30) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Cre16.g666301 No alias Ribosomal protein S30 family protein 0.41 Orthogroups_2024-Update
GRMZM2G054012 No alias Ribosomal protein S30 family protein 0.07 Orthogroups_2024-Update
HORVU7Hr1G027760.1 No alias component *(eS30) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
LOC_Os06g07580 No alias expressed protein 0.04 Orthogroups_2024-Update
MA_10432727g0010 No alias (at5g56670 : 97.4) Ribosomal protein S30 family protein;... 0.07 Orthogroups_2024-Update
Mp2g24290.1 No alias component RPS30 of SSU proteome 0.07 Orthogroups_2024-Update
Mp8g09080.1 No alias component RPS30 of SSU proteome 0.05 Orthogroups_2024-Update
PSME_00048165-RA No alias no hits & (original description: no original description) 0.14 Orthogroups_2024-Update
Potri.012G086600 No alias Ribosomal protein S30 family protein 0.07 Orthogroups_2024-Update
Potri.014G147200 No alias Ribosomal protein S30 family protein 0.08 Orthogroups_2024-Update
Potri.015G084700 No alias Ribosomal protein S30 family protein 0.1 Orthogroups_2024-Update
Pp1s22_155V6 No alias 40s ribosomal protein s30 0.2 Orthogroups_2024-Update
Pp1s22_171V6 No alias 40s ribosomal protein s30 0.14 Orthogroups_2024-Update
Pp1s283_53V6 No alias 40s ribosomal protein s30 0.23 Orthogroups_2024-Update
Pp1s97_259V6 No alias 40s ribosomal protein s30 0.19 Orthogroups_2024-Update
evm.model.tig00001003.33 No alias no hits & (original description: no original description) 0.19 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!