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  5. Pp1s53_78V6

Pp1s53_78V6


Description : wd repeat and fyve domain containing 3 isoform 1


Gene families : OG_42_0005216 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005216_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s53_78V6
Cluster HCCA clusters: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
Glyma.02G144200 No alias Beige/BEACH domain ;WD domain, G-beta repeat protein 0.04 Orthogroups_2024-Update
Glyma.10G030000 No alias Beige/BEACH domain ;WD domain, G-beta repeat protein 0.05 Orthogroups_2024-Update
Kfl00141_0225 kfl00141_0225_v1.1 (at4g02660 : 924.0) Beige/BEACH domain ;WD domain,... 0.01 Orthogroups_2024-Update
MA_12084g0010 No alias (at1g03060 : 3258.0) Encodes a WD/BEACH domain protein... 0.02 Orthogroups_2024-Update
Seita.9G096400.1 No alias Unknown function 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000270 peptidoglycan metabolic process IEP Predicted GO
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003714 transcription corepressor activity IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004057 arginyltransferase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005665 RNA polymerase II, core complex IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0009254 peptidoglycan turnover IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016598 protein arginylation IEP Predicted GO
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
BP GO:0030203 glycosaminoglycan metabolic process IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR023362 PH-BEACH_dom 2972 3028
IPR000409 BEACH_dom 3067 3345
IPR000306 Znf_FYVE 3695 3749
IPR001680 WD40_repeat 3430 3459
IPR001680 WD40_repeat 3474 3510
No external refs found!