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  5. Pp1s543_6V6

Pp1s543_6V6


Description : hypothetical protein [Oryza sativa (japonica cultivar-group)]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s543_6V6
Cluster HCCA clusters: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
105356 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
At3g15130 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Orthogroups_2024-Update
Bradi2g15700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Bradi3g55520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.C02021.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E00543.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I03962.1 No alias RNA editing factor *(OTP84) 0.03 Orthogroups_2024-Update
Brara.I04699.1 No alias RNA editing factor *(MEF21) 0.02 Orthogroups_2024-Update
GRMZM2G176523 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G380195 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G127500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G206900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G221300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G288100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G113990.21 No alias RNA editing factor *(CRR28) 0.01 Orthogroups_2024-Update
HORVU6Hr1G079830.1 No alias RNA editing factor *(CLB19) 0.02 Orthogroups_2024-Update
LOC_Os05g36350 No alias pentatricopeptide, putative, expressed 0.01 Orthogroups_2024-Update
MA_103698g0030 No alias (at3g13770 : 453.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_10429043g0020 No alias (at4g18750 : 616.0) Encodes a pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
MA_136326g0010 No alias (at5g09950 : 662.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_210089g0010 No alias (at2g13600 : 442.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_291996g0010 No alias (at1g11290 : 549.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_36655g0010 No alias (at4g39530 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_944980g0010 No alias (at3g12770 : 548.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00002641-RA No alias (at1g11290 : 548.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00005432-RA No alias (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00005903-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00006511-RA No alias (at1g11290 : 568.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00009010-RA No alias (at4g13650 : 679.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00022404-RA No alias (at3g57430 : 647.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00032006-RA No alias (at2g13600 : 367.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00036103-RA No alias (at2g13600 : 422.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00037812-RA No alias (at4g13650 : 600.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00038093-RA No alias (at2g27610 : 590.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00038705-RA No alias (at3g23330 : 523.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00046650-RA No alias (at4g21300 : 573.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00051747-RA No alias (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00056336-RA No alias (at1g11290 : 707.0) Pentatricopeptide Repeat Protein... 0.01 Orthogroups_2024-Update
PSME_00056779-RA No alias (at4g13650 : 709.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00057046-RA No alias (at4g18750 : 592.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.2G068700.1 No alias RNA editing factor *(CRR28) 0.01 Orthogroups_2024-Update
Sobic.004G282000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G250700.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sopen01g032720 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 182 231
IPR002885 Pentatricopeptide_repeat 689 736
IPR002885 Pentatricopeptide_repeat 385 430
IPR002885 Pentatricopeptide_repeat 488 533
IPR002885 Pentatricopeptide_repeat 284 329
IPR002885 Pentatricopeptide_repeat 790 837
IPR002885 Pentatricopeptide_repeat 589 633
IPR032867 DYW_dom 963 1087
IPR002885 Pentatricopeptide_repeat 864 888
No external refs found!