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  5. Pp1s55_112V6

Pp1s55_112V6


Description : histone 2


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s55_112V6
Cluster HCCA clusters: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
170948 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g06010 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Brara.A02813.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Cre06.g265350 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g268050 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g273900 No alias histone H2A 10 0.07 Orthogroups_2024-Update
Cre06.g275850 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre12.g504750 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Cre17.g713400 No alias histone H2A 10 0.02 Orthogroups_2024-Update
GRMZM2G130746 No alias histone H2A 12 0.02 Orthogroups_2024-Update
Glyma.12G215500 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Glyma.15G040400 No alias histone H2A 12 0.03 Orthogroups_2024-Update
HORVU4Hr1G008800.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU4Hr1G058810.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU6Hr1G006080.2 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU6Hr1G011490.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G021160.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU7Hr1G100100.3 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU7Hr1G100110.4 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Kfl00099_g21 kfl00099_g21_v1.1 (q2qpg9|h2axb_orysa : 166.0) Probable histone H2AXb -... 0.02 Orthogroups_2024-Update
LOC_Os05g02300 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
MA_11514g0010 No alias (p50567|h2a_chlre : 116.0) Histone H2A - Chlamydomonas... 0.04 Orthogroups_2024-Update
MA_191819g0010 No alias (at4g27230 : 166.0) Encodes HTA2, a histone H2A... 0.02 Orthogroups_2024-Update
PSME_00008210-RA No alias (at1g54690 : 107.0) Encodes HTA3, a histone H2A protein.... 0.04 Orthogroups_2024-Update
Seita.2G287100.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.3G063000.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.5G370600.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.9G450000.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sobic.001G416800.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sopen01g042970 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen09g029130 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen09g031570 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen10g002510 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen11g030890 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
evm.model.contig_533.4 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 96 130
IPR007125 Histone_H2A/H2B/H3 11 93
No external refs found!