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  5. Solyc12g009420

Solyc12g009420


Description : Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57510.1)


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g009420
Cluster HCCA clusters: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
At5g27530 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
Bradi2g18060 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.G00978.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Glyma.12G012200 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G275400 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.U005701 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G079130.2 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
PSME_00025694-RA No alias (at1g80170 : 422.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.012G119700 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.5G383600.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Seita.9G044000.1 No alias polygalacturonase *(QRT2) & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Sobic.001G045900.1 No alias polygalacturonase *(QRT2) & EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Sobic.006G178900.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Sopen03g032290 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
MF GO:0050080 malonyl-CoA decarboxylase activity IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 4 218
No external refs found!