1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s58_254V6

Pp1s58_254V6


Description : splicing factor-like protein


Gene families : OG_42_0001657 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001657_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s58_254V6
Cluster HCCA clusters: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
Glyma.06G324000 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.02 Orthogroups_2024-Update
HORVU4Hr1G038850.4 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Orthogroups_2024-Update
Kfl00054_0160 kfl00054_0160_v1.1 (at1g60900 : 445.0) U2 snRNP auxilliary factor, large... 0.01 Orthogroups_2024-Update
Potri.005G125500 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.02 Orthogroups_2024-Update
Pp1s88_42V6 No alias u2 snrnp auxiliary large subunit 0.03 Orthogroups_2024-Update
Solyc02g085570 No alias Splicing factor u2af large subunit, putative (AHRD V3.3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 360 429
IPR000504 RRM_dom 239 310
IPR000504 RRM_dom 525 584
No external refs found!