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  5. Solyc12g009530

Solyc12g009530


Description : Leucine-rich-repeat receptor-like protein (AHRD V3.3 *** A0A0D4WVW2_GOSBA)


Gene families : OG_42_0000110 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g009530
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
Potri.012G025100 No alias receptor like protein 6 0.03 Orthogroups_2024-Update
Solyc01g016370 No alias Leucine-rich repeat receptor-like protein kinase family... 0.03 Orthogroups_2024-Update
Solyc10g076490 No alias Leucine-rich-repeat receptor-like protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 74 134
IPR001611 Leu-rich_rpt 343 400
IPR001611 Leu-rich_rpt 3 62
IPR001611 Leu-rich_rpt 195 252
IPR025875 Leu-rich_rpt_4 147 189
No external refs found!