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  5. Pp1s59_5V6

Pp1s59_5V6


Description : 40s ribosomal protein


Gene families : OG_42_0001610 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001610_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s59_5V6
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
Bradi4g38580 No alias Ribosomal protein S25 family protein 0.03 Orthogroups_2024-Update
Brara.A00031.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.D01272.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
GRMZM2G084868 No alias Function unknown 0.02 Orthogroups_2024-Update
MA_10430279g0010 No alias (at4g34555 : 128.0) Ribosomal protein S25 family... 0.03 Orthogroups_2024-Update
PSME_00018601-RA No alias (at2g21580 : 128.0) Ribosomal protein S25 family... 0.02 Orthogroups_2024-Update
Seita.2G134200.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Seita.6G248800.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.003G338966.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Sopen10g023380 No alias S25 ribosomal protein 0.03 Orthogroups_2024-Update
evm.model.contig_2033.4 No alias (at4g34555 : 106.0) Ribosomal protein S25 family... 0.03 Orthogroups_2024-Update
evm.model.tig00000037.5 No alias (at4g39200 : 85.1) Ribosomal protein S25 family protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004977 Ribosomal_S25 5 105
No external refs found!