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  5. Pp1s59_81V6

Pp1s59_81V6


Description : rna helicase


Gene families : OG_42_0000814 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s59_81V6
Cluster HCCA clusters: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
A4A49_13551 No alias atp-dependent rna helicase-like protein db10 0.02 Orthogroups_2024-Update
A4A49_32643 No alias dead-box atp-dependent rna helicase 20 0.03 Orthogroups_2024-Update
Bradi2g04460 No alias DEAD box RNA helicase 1 0.02 Orthogroups_2024-Update
Bradi2g40760 No alias DEAD box RNA helicase family protein 0.02 Orthogroups_2024-Update
Kfl00173_0040 kfl00173_0040_v1.... (at1g55150 : 686.0) DEA(D/H)-box RNA helicase family... 0.02 Orthogroups_2024-Update
Potri.003G038300 No alias DEA(D/H)-box RNA helicase family protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 394 503
IPR011545 DEAD/DEAH_box_helicase_dom 187 356
No external refs found!