Solyc12g010010

Description : Cyclic nucleotide-gated ion channel, putative (AHRD V3.3 *** B9STR6_RICCO)

Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc12g010010
Cluster	HCCA clusters: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
At4g30560	No alias	Putative cyclic nucleotide-gated ion channel 9...	0.01	Orthogroups_2024-Update
Bradi1g46970	No alias	cyclic nucleotide-gated channel 17	0.01	Orthogroups_2024-Update
Bradi3g09550	No alias	cyclic nucleotide gated channel 1	0.03	Orthogroups_2024-Update
GRMZM6G059647	No alias	cyclic nucleotide-gated channel 18	0.03	Orthogroups_2024-Update
Glyma.06G271200	No alias	cyclic nucleotide-gated cation channel 4	0.03	Orthogroups_2024-Update
Glyma.09G168500	No alias	cyclic nucleotide-binding transporter 1	0.04	Orthogroups_2024-Update
HORVU5Hr1G065950.1	No alias	cyclic nucleotide-gated cation channel *(CNGC)	0.03	Orthogroups_2024-Update
Kfl00280_0030	kfl00280_0030_v1.1	(at5g15410 : 444.0) 'defense, no death' gene (DND1)...	0.02	Orthogroups_2024-Update
LOC_Os06g08850	No alias	cyclic nucleotide-gated ion channel 14, putative, expressed	0.02	Orthogroups_2024-Update
PSME_00032968-RA	No alias	(at1g19780 : 461.0) member of Cyclic nucleotide gated...	0.02	Orthogroups_2024-Update
PSME_00037092-RA	No alias	(at5g54250 : 808.0) member of Cyclic nucleotide gated...	0.04	Orthogroups_2024-Update
Pp1s204_120V6	No alias	MKP6.28; cyclic nucleotide-binding transporter 1 / CNBT1...	0.02	Orthogroups_2024-Update
Seita.1G240900.1	No alias	cyclic nucleotide-gated cation channel *(CNGC)	0.02	Orthogroups_2024-Update
Sopen02g033280	No alias	Cyclic nucleotide-binding domain	0.02	Orthogroups_2024-Update
Sopen03g003230	No alias	Ion transport protein	0.03	Orthogroups_2024-Update
Sopen05g028790	No alias	Ion transport protein	0.04	Orthogroups_2024-Update
Sopen07g001700	No alias	Ion transport protein	0.03	Orthogroups_2024-Update
Sopen12g004880	No alias	Ion transport protein	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	InterProScan predictions

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Type	GO Term	Name	Evidence	Source
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005506	iron ion binding	IEP	Predicted GO
CC	GO:0005737	cytoplasm	IEP	Predicted GO
BP	GO:0005996	monosaccharide metabolic process	IEP	Predicted GO
BP	GO:0006006	glucose metabolic process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006869	lipid transport	IEP	Predicted GO
BP	GO:0006952	defense response	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0017089	glycolipid transporter activity	IEP	Predicted GO
BP	GO:0019318	hexose metabolic process	IEP	Predicted GO
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predicted GO
CC	GO:0030118	clathrin coat	IEP	Predicted GO
CC	GO:0030125	clathrin vesicle coat	IEP	Predicted GO
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Predicted GO
CC	GO:0030132	clathrin coat of coated pit	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0042255	ribosome assembly	IEP	Predicted GO
BP	GO:0042256	mature ribosome assembly	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
CC	GO:0044459	plasma membrane part	IEP	Predicted GO
BP	GO:0046836	glycolipid transport	IEP	Predicted GO
MF	GO:0051861	glycolipid binding	IEP	Predicted GO
BP	GO:0070925	organelle assembly	IEP	Predicted GO
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
CC	GO:0098797	plasma membrane protein complex	IEP	Predicted GO
BP	GO:1901264	carbohydrate derivative transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000595	cNMP-bd_dom	487	573
IPR005821	Ion_trans_dom	66	390

External Links

No external refs found!

Solyc12g010010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation