1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g100340

Solyc01g100340


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118JRX1_CYNCS)


Gene families : OG_42_0004020 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004020_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g100340
Cluster HCCA clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
At2g21090 No alias Pentatricopeptide repeat-containing protein At2g21090... 0.02 Orthogroups_2024-Update
Glyma.07G252200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G072500 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003714 transcription corepressor activity IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 175 202
IPR002885 Pentatricopeptide_repeat 151 172
IPR002885 Pentatricopeptide_repeat 379 404
IPR002885 Pentatricopeptide_repeat 70 118
IPR002885 Pentatricopeptide_repeat 304 351
IPR002885 Pentatricopeptide_repeat 203 249
No external refs found!