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  5. Solyc01g100380

Solyc01g100380


Description : Calreticulin (AHRD V3.3 *** CALR_NICPL)


Gene families : OG_42_0001219 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g100380
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
At1g09210 No alias Calreticulin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q38858] 0.03 Orthogroups_2024-Update
At1g56340 No alias Calreticulin-1 [Source:UniProtKB/Swiss-Prot;Acc:O04151] 0.03 Orthogroups_2024-Update
Bradi1g02940 No alias calreticulin 1a 0.08 Orthogroups_2024-Update
Bradi2g57537 No alias calreticulin 3 0.07 Orthogroups_2024-Update
Brara.A02267.1 No alias ER luminal lectin chaperone *(CRT) 0.04 Orthogroups_2024-Update
Brara.I01691.1 No alias ER luminal lectin chaperone *(CRT) 0.07 Orthogroups_2024-Update
Cre01.g038400 No alias calreticulin 1b 0.02 Orthogroups_2024-Update
GRMZM2G074687 No alias calreticulin 1a 0.04 Orthogroups_2024-Update
GRMZM2G358059 No alias calreticulin 1a 0.05 Orthogroups_2024-Update
Glyma.10G147600 No alias calreticulin 1b 0.07 Orthogroups_2024-Update
Glyma.11G126100 No alias calreticulin 3 0.02 Orthogroups_2024-Update
Glyma.20G098400 No alias calreticulin 1b 0.06 Orthogroups_2024-Update
Kfl00090_0160 kfl00090_0160_v1.1 (at1g56340 : 471.0) Encodes one of three Arabidopsis... 0.03 Orthogroups_2024-Update
Potri.013G009500 No alias calreticulin 1b 0.03 Orthogroups_2024-Update
Seita.J030900.1 No alias ER luminal lectin chaperone *(CRT) 0.04 Orthogroups_2024-Update
Sobic.002G090500.1 No alias ER luminal lectin chaperone *(CRT) 0.03 Orthogroups_2024-Update
Sopen01g043900 No alias Calreticulin family 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
CC GO:0005783 endoplasmic reticulum IEA InterProScan predictions
BP GO:0006457 protein folding IEA InterProScan predictions
MF GO:0051082 unfolded protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP Predicted GO
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
BP GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEP Predicted GO
CC GO:0000922 spindle pole IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003756 protein disulfide isomerase activity IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004532 exoribonuclease activity IEP Predicted GO
MF GO:0004535 poly(A)-specific ribonuclease activity IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005815 microtubule organizing center IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006471 protein ADP-ribosylation IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0007020 microtubule nucleation IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009200 deoxyribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Predicted GO
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
BP GO:0019692 deoxyribose phosphate metabolic process IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
BP GO:0046080 dUTP metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001580 Calret/calnex 31 266
IPR001580 Calret/calnex 268 341
No external refs found!