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  5. Pp1s72_104V6

Pp1s72_104V6


Description : polyubiquitin


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s72_104V6
Cluster HCCA clusters: Cluster_261

Target Alias Description ECC score Gene Family Method Actions
93613 No alias related to ubiquitin 1 0.03 Orthogroups_2024-Update
At1g31340 No alias RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2] 0.02 Orthogroups_2024-Update
At2g36170 No alias Ubiquitin-60S ribosomal protein L40-1... 0.02 Orthogroups_2024-Update
Bradi2g12280 No alias Ribosomal protein S27a / Ubiquitin family protein 0.02 Orthogroups_2024-Update
Bradi2g34750 No alias Ribosomal protein S27a / Ubiquitin family protein 0.01 Orthogroups_2024-Update
HORVU6Hr1G026280.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00013_0160 kfl00013_0160_v1.... (at5g03240 : 110.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
MA_10435699g0020 No alias (at2g47110 : 231.0) polyubiquitin gene; ubiquitin 6... 0.01 Orthogroups_2024-Update
Potri.002G190000 No alias ubiquitin 6 0.02 Orthogroups_2024-Update
Sobic.002G292500.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 79 150
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 231 302
IPR000626 Ubiquitin_dom 155 226
No external refs found!