Pp1s72_222V6

Description : 40s ribosomal protein s18

Gene families : OG_42_0001811 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001811_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Physcomitrella release: Pp1s72_222V6
Cluster	HCCA clusters: Cluster_281

Target	Alias	Description	ECC score	Gene Family Method
267619	No alias	S18 ribosomal protein	0.01	Orthogroups_2024-Update
Bradi1g05670	No alias	Ribosomal protein S13/S18 family	0.03	Orthogroups_2024-Update
Bradi1g55980	No alias	Ribosomal protein S13/S18 family	0.04	Orthogroups_2024-Update
Brara.I02440.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Cre06.g272950	No alias	Ribosomal protein S13/S18 family	0.01	Orthogroups_2024-Update
GRMZM2G130544	No alias	Ribosomal protein S13/S18 family	0.02	Orthogroups_2024-Update
Glyma.02G079000	No alias	S18 ribosomal protein	0.03	Orthogroups_2024-Update
Mp1g07420.1	No alias	component RPS18 of SSU proteome	0.02	Orthogroups_2024-Update
Mp5g02820.1	No alias	component RPS18 of SSU proteome	0.02	Orthogroups_2024-Update
Pp1s14_433V6	No alias	40s ribosomal protein s18	0.04	Orthogroups_2024-Update
Pp1s215_71V6	No alias	40s ribosomal protein s18	0.03	Orthogroups_2024-Update
Seita.5G053700.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Sobic.001G058900.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Sobic.002G049300.1	No alias	component *(uS13) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Solyc03g078290	No alias	Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS)	0.03	Orthogroups_2024-Update
Solyc06g073370	No alias	Ribosomal protein S13 (AHRD V3.3 *** A0A103XPA4_CYNCS)	0.03	Orthogroups_2024-Update
evm.model.contig_2176.2	No alias	(at4g09800 : 195.0) encodes a ribosomal protein S18C, a...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	Predicted GO
MF	GO:0004527	exonuclease activity	IEP	Predicted GO
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predicted GO
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	14	142

External Links

No external refs found!

Pp1s72_222V6

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation