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  5. Pp1s72_85V6

Pp1s72_85V6


Description : histone h2a


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s72_85V6
Cluster HCCA clusters: Cluster_204

Target Alias Description ECC score Gene Family Method Actions
At3g20670 No alias Probable histone H2A.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHQ5] 0.02 Orthogroups_2024-Update
Bradi1g66370 No alias histone H2A 6 0.01 Orthogroups_2024-Update
Brara.E01648.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Glyma.13G333800 No alias histone H2A 12 0.02 Orthogroups_2024-Update
Glyma.19G239200 No alias gamma histone variant H2AX 0.02 Orthogroups_2024-Update
HORVU6Hr1G006080.2 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU6Hr1G011620.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
LOC_Os07g36130 No alias core histone H2A/H2B/H3/H4, putative, expressed 0.02 Orthogroups_2024-Update
MA_10434390g0010 No alias (at5g54640 : 110.0) Isolated from T-DNA insertion line,... 0.02 Orthogroups_2024-Update
MA_22203g0020 No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.02 Orthogroups_2024-Update
MA_93628g0020 No alias (q2hu68|h2a1_medtr : 174.0) Probable histone H2A.1 -... 0.03 Orthogroups_2024-Update
Mp2g00760.1 No alias histone (H2A) 0.02 Orthogroups_2024-Update
Mp3g00840.1 No alias histone (H2A) 0.01 Orthogroups_2024-Update
Potri.004G031300 No alias histone H2A 2 0.02 Orthogroups_2024-Update
Potri.005G026500 No alias histone H2A 7 0.01 Orthogroups_2024-Update
Potri.006G082300 No alias histone H2A 12 0.02 Orthogroups_2024-Update
Potri.013G028800 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Seita.3G063000.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sobic.008G114500.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Solyc10g006560 No alias Histone H2A (AHRD V3.3 *** A0A0V0H7M3_SOLCH) 0.01 Orthogroups_2024-Update
Solyc11g073260 No alias Histone H2A (AHRD V3.3 *** K4DB32_SOLLC) 0.01 Orthogroups_2024-Update
Solyc12g005270 No alias Histone H2A (AHRD V3.3 *** K4DB65_SOLLC) 0.01 Orthogroups_2024-Update
Sopen06g035820 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen11g030880 No alias Core histone H2A/H2B/H3/H4 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 12 90
IPR032454 Histone_H2A_C 93 126
No external refs found!