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  5. Pp1s72_86V6

Pp1s72_86V6


Description : histone h2a


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s72_86V6
Cluster HCCA clusters: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
Brara.E02150.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Brara.J01356.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Cre06.g264950 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g265350 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g268050 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g268300 No alias histone H2A 10 0.05 Orthogroups_2024-Update
Cre06.g274200 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g275850 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre12.g505550 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre12.g506250 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre13.g570100 No alias histone H2A 10 0.05 Orthogroups_2024-Update
Cre17.g708550 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g709200 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre17.g713400 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Glyma.03G241800 No alias gamma histone variant H2AX 0.03 Orthogroups_2024-Update
Glyma.13G333800 No alias histone H2A 12 0.03 Orthogroups_2024-Update
Glyma.13G334300 No alias histone H2A 12 0.03 Orthogroups_2024-Update
Glyma.15G040200 No alias histone H2A 12 0.03 Orthogroups_2024-Update
HORVU1Hr1G005870.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU6Hr1G006140.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU6Hr1G011490.2 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU6Hr1G021160.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU6Hr1G021260.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G100100.3 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU7Hr1G100110.4 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU7Hr1G112470.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Kfl00099_g21 kfl00099_g21_v1.1 (q2qpg9|h2axb_orysa : 166.0) Probable histone H2AXb -... 0.03 Orthogroups_2024-Update
Kfl00125_0190 kfl00125_0190_v1.1 (p50567|h2a_chlre : 169.0) Histone H2A - Chlamydomonas... 0.02 Orthogroups_2024-Update
MA_10426943g0010 No alias (p50567|h2a_chlre : 132.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
PSME_00008207-RA No alias (p02276|h2a2_wheat : 135.0) Histone H2A.2.1 - Triticum... 0.04 Orthogroups_2024-Update
PSME_00008212-RA No alias (p50567|h2a_chlre : 107.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
PSME_00015855-RA No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.04 Orthogroups_2024-Update
PSME_00040346-RA No alias (p50567|h2a_chlre : 144.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
Seita.5G370700.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sobic.001G416800.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sobic.001G416900.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Sopen01g042970 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen09g029130 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen09g031570 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen10g002510 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 12 90
IPR032454 Histone_H2A_C 93 125
No external refs found!