Solyc12g014080

Description : Rab family GTPase (AHRD V3.3 *** D8RE14_SELML)

Gene families : OG_42_0000131 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000131_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc12g014080
Cluster	HCCA clusters: Cluster_55

Target	Alias	Description	ECC score	Gene Family Method
At1g01200	No alias	RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]	0.03	Orthogroups_2024-Update
Brara.J02319.1	No alias	A-class RAB GTPase	0.03	Orthogroups_2024-Update
GRMZM2G093186	No alias	RAB GTPase homolog A2B	0.02	Orthogroups_2024-Update
LOC_Os05g48980	No alias	ras-related protein, putative, expressed	0.02	Orthogroups_2024-Update
Potri.001G374000	No alias	RAB GTPase homolog A1F	0.04	Orthogroups_2024-Update
Potri.006G057700	No alias	RAB GTPase homolog A4D	0.03	Orthogroups_2024-Update
Potri.008G061300	No alias	RAB GTPase homolog A2B	0.03	Orthogroups_2024-Update
Solyc03g079900	No alias	Ras-related protein, expressed (AHRD V3.3 *** D8L9F8_WHEAT)	0.05	Orthogroups_2024-Update
Solyc05g052900	No alias	Ras-related protein, expressed (AHRD V3.3 *** D8L9F8_WHEAT)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	InterProScan predictions
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007264	small GTPase mediated signal transduction	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
MF	GO:0010333	terpene synthase activity	IEP	Predicted GO
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	16	176

External Links

No external refs found!