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  5. Solyc12g014200

Solyc12g014200


Description : trichome birefringence-like protein (DUF828) (AHRD V3.3 *** AT1G73140.1)


Gene families : OG_42_0012999 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012999_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g014200
Cluster HCCA clusters: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
Brara.B02059.1 No alias xylan O-acetyltransferase *(XOAT) 0.03 Orthogroups_2024-Update
Potri.001G376700 No alias Plant protein of unknown function (DUF828) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0000502 proteasome complex IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR026057 PC-Esterase 180 462
IPR025846 PMR5_N_dom 126 179
No external refs found!