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  5. Pp1s79_180V6

Pp1s79_180V6


Description : coatomer beta


Gene families : OG_42_0001146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001146_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s79_180V6
Cluster HCCA clusters: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
A4A49_14921 No alias coatomer subunit beta'-2 0.02 Orthogroups_2024-Update
A4A49_56618 No alias coatomer subunit beta'-2 0.02 Orthogroups_2024-Update
Bradi1g51210 No alias Coatomer, beta\' subunit 0.08 Orthogroups_2024-Update
Bradi3g07926 No alias Coatomer, beta\' subunit 0.04 Orthogroups_2024-Update
Brara.H00818.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H00819.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre02.g118500 No alias Coatomer, beta\' subunit 0.03 Orthogroups_2024-Update
GRMZM2G141587 No alias Coatomer, beta\' subunit 0.02 Orthogroups_2024-Update
Glyma.07G034700 No alias Coatomer, beta\' subunit 0.02 Orthogroups_2024-Update
Glyma.08G207300 No alias Coatomer, beta\' subunit 0.02 Orthogroups_2024-Update
Glyma.15G013800 No alias Coatomer, beta\' subunit 0.03 Orthogroups_2024-Update
HORVU7Hr1G019930.1 No alias subunit beta2 of coat protein complex 0.03 Orthogroups_2024-Update
Kfl00008_0120 kfl00008_0120_v1.1 (at1g52360 : 1341.0) Coatomer, beta' subunit; FUNCTIONS... 0.02 Orthogroups_2024-Update
MA_10433989g0020 No alias (at1g52360 : 165.0) Coatomer, beta' subunit; FUNCTIONS... 0.02 Orthogroups_2024-Update
Mp3g04060.1 No alias subunit beta2 of coat protein complex 0.02 Orthogroups_2024-Update
Seita.1G040200.1 No alias subunit beta2 of coat protein complex 0.05 Orthogroups_2024-Update
Seita.4G032400.1 No alias subunit beta2 of coat protein complex 0.04 Orthogroups_2024-Update
Seita.4G227600.1 No alias subunit beta2 of coat protein complex 0.04 Orthogroups_2024-Update
Sobic.004G088450.1 No alias subunit beta2 of coat protein complex 0.02 Orthogroups_2024-Update
Sobic.004G088501.1 No alias subunit beta2 of coat protein complex 0.02 Orthogroups_2024-Update
Sobic.010G178600.1 No alias subunit beta2 of coat protein complex 0.04 Orthogroups_2024-Update
Solyc03g120270 No alias Coatomer beta subunit, putative (AHRD V3.3 *** B9SQC0_RICCO) 0.02 Orthogroups_2024-Update
Solyc06g066730 No alias Coatomer beta subunit, putative (AHRD V3.3 *** B9SQC0_RICCO) 0.02 Orthogroups_2024-Update
evm.model.contig_4516.1 No alias (at1g79990 : 963.0) structural molecules; FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
evm.model.tig00020903.33 No alias (at1g79990 : 1008.0) structural molecules; FUNCTIONS IN:... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
CC GO:0030117 membrane coat IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004181 metallocarboxypeptidase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
CC GO:0005801 cis-Golgi network IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Predicted GO
BP GO:0015689 molybdate ion transport IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 319 763
IPR001680 WD40_repeat 91 127
IPR001680 WD40_repeat 59 85
IPR001680 WD40_repeat 134 171
IPR001680 WD40_repeat 221 256
IPR001680 WD40_repeat 177 215
No external refs found!