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  5. Solyc12g017560

Solyc12g017560


Description : LOW QUALITY:AT hook motif-containing protein, putative (AHRD V3.3 *-* Q94LS7_ORYSJ)


Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g017560
Cluster HCCA clusters: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
A4A49_57387 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Brara.D00782.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.K01563.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.07G160600 No alias PIF1 helicase 0.02 Orthogroups_2024-Update
LOC_Os04g28820 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g45750 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g23110 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Seita.1G149400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.2G155500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G082300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G144400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G108900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G083700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g017850 No alias LOW QUALITY:PIF1-like helicase (AHRD V3.3 *-* A0A072TJC6_MEDTR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR025476 Helitron_helicase-like 21 202
No external refs found!