Pp1s86_1V6

Description : auxin response

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Physcomitrella release: Pp1s86_1V6
Cluster	HCCA clusters: Cluster_155

Target	Alias	Description	ECC score	Gene Family Method
117217	No alias	auxin response factor 6	0.02	Orthogroups_2024-Update
424114	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
A4A49_18150	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
A4A49_41656	No alias	auxin response factor 9	0.02	Orthogroups_2024-Update
At1g19850	No alias	Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]	0.03	Orthogroups_2024-Update
At1g34310	No alias	Auxin response factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9XID4]	0.02	Orthogroups_2024-Update
Bradi1g32547	No alias	auxin response factor 6	0.02	Orthogroups_2024-Update
Bradi3g45880	No alias	auxin response factor 1	0.02	Orthogroups_2024-Update
Brara.F02033.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.G02126.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I04264.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
GRMZM2G338259	No alias	auxin response factor 2	0.02	Orthogroups_2024-Update
GRMZM2G702026	No alias	auxin response factor 1	0.03	Orthogroups_2024-Update
Glyma.01G103500	No alias	auxin response factor 9	0.02	Orthogroups_2024-Update
Glyma.02G239600	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Glyma.05G200800	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Glyma.08G027800	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.08G100100	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
Glyma.10G210600	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
Glyma.11G204200	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Glyma.12G076200	No alias	auxin response factor 10	0.02	Orthogroups_2024-Update
Glyma.13G112600	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
Glyma.13G221400	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
Glyma.13G234200	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.14G032700	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
Glyma.15G091000	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
Glyma.15G181000	No alias	auxin response factor 19	0.03	Orthogroups_2024-Update
Glyma.17G047100	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
Glyma.19G181900	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
HORVU2Hr1G089660.7	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os01g13520	No alias	auxin response factor 1, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os01g48060	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os02g06910	No alias	auxin response factor 6, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os04g36054	No alias	auxin response factor 9, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os05g48870	No alias	auxin response factor 15, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os11g32110	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
MA_2237g0020	No alias	(at4g30080 : 537.0) Involved in root cap cell...	0.02	Orthogroups_2024-Update
Potri.003G142100	No alias	auxin response factor 9	0.02	Orthogroups_2024-Update
Pp1s48_147V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Seita.3G147000.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.3G321500.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.4G257800.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Seita.8G135700.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sopen01g045470	No alias	Auxin response factor	0.02	Orthogroups_2024-Update
Sopen03g037200	No alias	Auxin response factor	0.02	Orthogroups_2024-Update
Sopen07g023180	No alias	Auxin response factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0003779	actin binding	IEP	Predicted GO
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006536	glutamate metabolic process	IEP	Predicted GO
BP	GO:0006537	glutamate biosynthetic process	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0007010	cytoskeleton organization	IEP	Predicted GO
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009314	response to radiation	IEP	Predicted GO
BP	GO:0009416	response to light stimulus	IEP	Predicted GO
BP	GO:0009581	detection of external stimulus	IEP	Predicted GO
BP	GO:0009582	detection of abiotic stimulus	IEP	Predicted GO
BP	GO:0009583	detection of light stimulus	IEP	Predicted GO
BP	GO:0009584	detection of visible light	IEP	Predicted GO
BP	GO:0009605	response to external stimulus	IEP	Predicted GO
BP	GO:0009628	response to abiotic stimulus	IEP	Predicted GO
MF	GO:0015930	glutamate synthase activity	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0016987	sigma factor activity	IEP	Predicted GO
BP	GO:0018298	protein-chromophore linkage	IEP	Predicted GO
BP	GO:0019321	pentose metabolic process	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
BP	GO:0019566	arabinose metabolic process	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Predicted GO
BP	GO:0044238	primary metabolic process	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
BP	GO:0046373	L-arabinose metabolic process	IEP	Predicted GO
MF	GO:0046556	alpha-L-arabinofuranosidase activity	IEP	Predicted GO
BP	GO:0051606	detection of stimulus	IEP	Predicted GO
MF	GO:0070001	aspartic-type peptidase activity	IEP	Predicted GO
BP	GO:0071704	organic substance metabolic process	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	115	216
IPR033389	AUX/IAA_dom	720	796
IPR010525	Auxin_resp	241	324

External Links

No external refs found!

Pp1s86_1V6

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation