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  5. Pp1s87_39V6

Pp1s87_39V6


Description : T16N11.20; transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]


Gene families : OG_42_0004382 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004382_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s87_39V6
Cluster HCCA clusters: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
80929 No alias periodic tryptophan protein 2 0.02 Orthogroups_2024-Update
Bradi2g19560 No alias periodic tryptophan protein 2 0.06 Orthogroups_2024-Update
Brara.F01061.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.05 Orthogroups_2024-Update
Cre06.g254150 No alias periodic tryptophan protein 2 0.05 Orthogroups_2024-Update
GRMZM2G060817 No alias periodic tryptophan protein 2 0.03 Orthogroups_2024-Update
Glyma.09G084600 No alias periodic tryptophan protein 2 0.02 Orthogroups_2024-Update
Glyma.15G193000 No alias periodic tryptophan protein 2 0.04 Orthogroups_2024-Update
HORVU1Hr1G086380.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.04 Orthogroups_2024-Update
LOC_Os05g44320 No alias WD domain, G-beta repeat domain containing protein, expressed 0.02 Orthogroups_2024-Update
Mp1g17900.1 No alias SSU processome assembly factor (UTP1/PWP2) 0.03 Orthogroups_2024-Update
Potri.001G173500 No alias periodic tryptophan protein 2 0.05 Orthogroups_2024-Update
Seita.3G175900.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.04 Orthogroups_2024-Update
Sobic.009G201200.1 No alias SSU processome assembly factor *(UTP1/PWP2) 0.03 Orthogroups_2024-Update
Solyc03g120080 No alias WD40 repeat-like protein (AHRD V3.3 *** I0YM64_COCSC) 0.07 Orthogroups_2024-Update
Sopen03g038950 No alias WD domain, G-beta repeat 0.06 Orthogroups_2024-Update
evm.model.contig_3478.9 No alias (at1g15440 : 433.0) periodic tryptophan protein 2... 0.03 Orthogroups_2024-Update
evm.model.tig00000076.89 No alias (at1g15440 : 99.4) periodic tryptophan protein 2 (PWP2);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 745 849
IPR001680 WD40_repeat 85 119
IPR001680 WD40_repeat 464 501
IPR001680 WD40_repeat 133 168
IPR001680 WD40_repeat 377 414
IPR001680 WD40_repeat 342 373
IPR001680 WD40_repeat 511 543
No external refs found!