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  5. Pp1s90_23V6

Pp1s90_23V6


Description : 60s ribosomal protein l7a


Gene families : OG_42_0001648 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s90_23V6
Cluster HCCA clusters: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
270545 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Orthogroups_2024-Update
At2g47610 No alias 60S ribosomal protein L7a-1... 0.02 Orthogroups_2024-Update
Bradi4g34750 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Orthogroups_2024-Update
Bradi5g24680 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 Orthogroups_2024-Update
Brara.A01492.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.C02368.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.D00049.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.E00034.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Brara.G01985.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.I04344.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Cre12.g529651 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Orthogroups_2024-Update
GRMZM2G178968 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 Orthogroups_2024-Update
GRMZM5G870752 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Orthogroups_2024-Update
Glyma.02G002800 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Orthogroups_2024-Update
Glyma.10G006200 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 Orthogroups_2024-Update
Glyma.11G103700 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G054670.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Kfl00122_0060 kfl00122_0060_v1.1 (p35685|rl7a_orysa : 414.0) 60S ribosomal protein L7a -... 0.02 Orthogroups_2024-Update
MA_109678g0010 No alias (p35685|rl7a_orysa : 335.0) 60S ribosomal protein L7a -... 0.04 Orthogroups_2024-Update
Mp2g23250.1 No alias component RPL7a of LSU proteome component 0.03 Orthogroups_2024-Update
Mp8g17650.1 No alias component RPL7a of LSU proteome component 0.04 Orthogroups_2024-Update
Pp1s149_35V6 No alias 60s ribosomal protein l7a 0.05 Orthogroups_2024-Update
Seita.2G267400.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Seita.4G177300.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Seita.6G224900.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Sobic.002G258800.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.002G259000.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Solyc01g097760 No alias 60S ribosomal protein L7A-like protein (AHRD V3.3 ***... 0.06 Orthogroups_2024-Update
Solyc06g064470 No alias 60S ribosomal protein L7A-like protein (AHRD V3.3 ***... 0.08 Orthogroups_2024-Update
Sopen01g041360 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.03 Orthogroups_2024-Update
Sopen06g015510 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.07 Orthogroups_2024-Update
Sopen06g022940 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.03 Orthogroups_2024-Update
evm.model.contig_3485.8 No alias (p35685|rl7a_orysa : 308.0) 60S ribosomal protein L7a -... 0.07 Orthogroups_2024-Update
evm.model.tig00000128.22 No alias (p35685|rl7a_orysa : 240.0) 60S ribosomal protein L7a -... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 121 212
No external refs found!