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  5. Pp1s94_163V6

Pp1s94_163V6


Description : ribosomal protein l1


Gene families : OG_42_0002710 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002710_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s94_163V6
Cluster HCCA clusters: Cluster_268

Target Alias Description ECC score Gene Family Method Actions
Bradi2g26940 No alias Ribosomal protein L1p/L10e family 0.02 Orthogroups_2024-Update
Glyma.09G227200 No alias Ribosomal protein L1p/L10e family 0.02 Orthogroups_2024-Update
Glyma.12G129400 No alias Ribosomal protein L1p/L10e family 0.02 Orthogroups_2024-Update
HORVU7Hr1G089470.2 No alias component *(uL1m) of large mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Kfl00523_0060 kfl00523_0060_v1.1 (at2g42710 : 164.0) Ribosomal protein L1p/L10e family;... 0.02 Orthogroups_2024-Update
Seita.4G176500.1 No alias component *(uL1m) of large mitoribosomal-subunit proteome 0.02 Orthogroups_2024-Update
Sobic.010G161525.1 No alias component *(uL1m) of large mitoribosomal-subunit proteome 0.02 Orthogroups_2024-Update
Solyc01g087730 No alias Ribosomal protein (AHRD V3.3 *** K4AYG3_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 139 251
No external refs found!