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  5. Solyc12g020110

Solyc12g020110


Description : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein (AHRD V3.3 *** AT1G11100.1)


Gene families : OG_42_0001293 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001293_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g020110
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Seita.7G030800.1 No alias chromatin remodeling factor *(Rad5) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR014905 HIRAN 40 132
IPR001650 Helicase_C 709 824
IPR018957 Znf_C3HC4_RING-type 639 677
IPR000330 SNF2_N 214 597
No external refs found!