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  5. Pp1s96_224V6

Pp1s96_224V6


Description : 4-coumarate:coenzyme a ligase 2


Gene families : OG_42_0000133 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000133_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s96_224V6
Cluster HCCA clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
177466 No alias OPC-8:0 CoA ligase1 0.03 Orthogroups_2024-Update
268211 No alias AMP-dependent synthetase and ligase family protein 0.03 Orthogroups_2024-Update
Bradi3g34531 No alias AMP-dependent synthetase and ligase family protein 0.02 Orthogroups_2024-Update
Bradi4g19947 No alias AMP-dependent synthetase and ligase family protein 0.03 Orthogroups_2024-Update
Brara.E02091.1 No alias p-coumarate 0.02 Orthogroups_2024-Update
Brara.G01099.1 No alias OPC-8 0.03 Orthogroups_2024-Update
Glyma.10G197900 No alias OPC-8:0 CoA ligase1 0.03 Orthogroups_2024-Update
HORVU0Hr1G018190.6 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os08g14760 No alias AMP-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_70509g0010 No alias (o24146|4cl2_tobac : 763.0) 4-coumarate--CoA ligase 2... 0.03 Orthogroups_2024-Update
PSME_00006219-RA No alias (at4g05160 : 449.0) Encodes a peroxisomal protein... 0.03 Orthogroups_2024-Update
PSME_00031259-RA No alias (at1g20510 : 270.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.04 Orthogroups_2024-Update
Seita.6G167900.1 No alias p-coumarate 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig 61 470
IPR025110 AMP-bd_C 479 554
No external refs found!