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Pp1s96_93V6


Description : pumilio domain-containing protein ppd1


Gene families : OG_42_0001049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001049_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s96_93V6
Cluster HCCA clusters: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
Bradi3g55540 No alias pumilio 4 0.01 Orthogroups_2024-Update
Glyma.10G209000 No alias pumilio 4 0.02 Orthogroups_2024-Update
PSME_00007228-RA No alias (at2g29200 : 852.0) Encodes a member of the Arabidopsis... 0.01 Orthogroups_2024-Update
PSME_00041217-RA No alias (at2g29200 : 595.0) Encodes a member of the Arabidopsis... 0.01 Orthogroups_2024-Update
Sobic.009G010300.1 No alias Unknown function 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
InterPro domains Description Start Stop
IPR012940 NABP 381 781
IPR001313 Pumilio_RNA-bd_rpt 819 850
IPR001313 Pumilio_RNA-bd_rpt 893 924
IPR001313 Pumilio_RNA-bd_rpt 855 887
IPR001313 Pumilio_RNA-bd_rpt 783 812
IPR001313 Pumilio_RNA-bd_rpt 967 992
IPR001313 Pumilio_RNA-bd_rpt 1049 1075
IPR001313 Pumilio_RNA-bd_rpt 1000 1031
IPR001313 Pumilio_RNA-bd_rpt 928 957
No external refs found!