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  5. Solyc12g027550

Solyc12g027550


Description : LOW QUALITY:Photosystem II CP43 reaction center protein (AHRD V3.3 *-* PSBC_LACSA)


Gene families : OG_42_0002207 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002207_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g027550
Cluster HCCA clusters: Cluster_295

Target Alias Description ECC score Gene Family Method Actions
137689 No alias photosystem II reaction center protein C 0.03 Orthogroups_2024-Update
Bradi1g70724 No alias photosystem II reaction center protein C 0.04 Orthogroups_2024-Update
Bradi1g78082 No alias photosystem II reaction center protein C 0.04 Orthogroups_2024-Update
PSME_00001174-RA No alias (p41643|psbc_pinth : 422.0) Photosystem II 44 kDa... 0.04 Orthogroups_2024-Update
PSME_00003195-RA No alias (p41643|psbc_pinth : 452.0) Photosystem II 44 kDa... 0.04 Orthogroups_2024-Update
PSME_00038449-RA No alias (p41643|psbc_pinth : 132.0) Photosystem II 44 kDa... 0.04 Orthogroups_2024-Update
Seita.4G174200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.J018300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G276500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G299900.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA InterProScan predictions
BP GO:0009767 photosynthetic electron transport chain IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016168 chlorophyll binding IEA InterProScan predictions
BP GO:0019684 photosynthesis, light reaction IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
CC GO:0005750 mitochondrial respiratory chain complex III IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
CC GO:0045275 respiratory chain complex III IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 1 59
No external refs found!