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  5. Solyc01g100800

Solyc01g100800


Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9I6P8_POPTR)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g100800
Cluster HCCA clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
10002 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
103939 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
107304 No alias mitochondrial editing factor 22 0.02 Orthogroups_2024-Update
134446 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
134551 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
412514 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
94945 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
98955 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
At3g16610 No alias Pentatricopeptide repeat-containing protein At3g16610... 0.03 Orthogroups_2024-Update
Bradi1g36900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g38705 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g47160 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g62180 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g37252 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g47510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g48960 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g15307 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.A01531.1 No alias plastidial RNA splicing factor *(OTP70) 0.03 Orthogroups_2024-Update
Brara.A03228.1 No alias RNA editing factor *(OTP72) 0.03 Orthogroups_2024-Update
Brara.G01483.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G03165.1 No alias RNA editing factor *(OTP87) 0.03 Orthogroups_2024-Update
HORVU7Hr1G051030.9 No alias RNA editing factor *(REME1) 0.03 Orthogroups_2024-Update
LOC_Os07g39910 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os08g28830 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_10277392g0010 No alias (at4g18750 : 498.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_13022g0010 No alias (at2g13600 : 530.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_138190g0010 No alias (at1g11290 : 553.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_139163g0010 No alias (at4g13650 : 549.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_286190g0010 No alias (at3g63370 : 605.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_75255g0010 No alias (at4g33170 : 685.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_9354530g0010 No alias (at1g11290 : 613.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00010400-RA No alias (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00016832-RA No alias (at4g18750 : 587.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00022325-RA No alias (at3g09040 : 700.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00028931-RA No alias (at3g25970 : 541.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00032004-RA No alias (at1g19720 : 530.0) Pentatricopeptide repeat (PPR-like)... 0.03 Orthogroups_2024-Update
PSME_00033965-RA No alias (at2g27610 : 573.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00036495-RA No alias (at1g11290 : 559.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00036890-RA No alias (at1g11290 : 679.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00048055-RA No alias (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Potri.001G019500 No alias SLOW GROWTH 1 0.03 Orthogroups_2024-Update
Potri.001G186500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.001G217600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.001G243800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.001G258500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.001G322100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G031600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G164900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.004G043400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G124400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G237000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G187800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.006G245300 No alias Function unknown 0.03 Orthogroups_2024-Update
Potri.007G146800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.012G048800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G065500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G083900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G091600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.018G040100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.018G067500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G031700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G100100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G216600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G381200.1 No alias RNA editing factor *(CRR2) 0.02 Orthogroups_2024-Update
Seita.9G007900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G477500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G001200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.02 Orthogroups_2024-Update
Sobic.001G149100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G111700.6 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G172500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G358900.3 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Sobic.002G385200.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.002G389200.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G047400.1 No alias RNA editing factor *(OTP81) 0.04 Orthogroups_2024-Update
Sobic.004G051600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G141600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G174800.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G312000.1 No alias RNA editing factor *(CLB19) 0.03 Orthogroups_2024-Update
Sobic.006G069100.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.03 Orthogroups_2024-Update
Sobic.007G006800.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G137800.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.008G009000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G066900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.008G179000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G116400.4 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.03 Orthogroups_2024-Update
Sobic.009G155400.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G067000.1 No alias RNA editing factor *(MEF29) 0.03 Orthogroups_2024-Update
Sobic.010G190900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen00g008750 No alias PPR repeat 0.06 Orthogroups_2024-Update
Sopen01g002910 No alias PPR repeat 0.07 Orthogroups_2024-Update
Sopen01g006160 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen01g033110 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen01g036300 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen01g037380 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g038950 No alias PPR repeat 0.07 Orthogroups_2024-Update
Sopen01g041280 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen01g054250 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen02g015160 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen02g025050 No alias PPR repeat family 0.1 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.1 Orthogroups_2024-Update
Sopen02g039140 No alias PPR repeat 0.08 Orthogroups_2024-Update
Sopen03g002990 No alias PPR repeat family 0.06 Orthogroups_2024-Update
Sopen03g003770 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g011150 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen03g016890 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen03g024500 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen03g028590 No alias PPR repeat family 0.06 Orthogroups_2024-Update
Sopen03g034990 No alias PPR repeat family 0.07 Orthogroups_2024-Update
Sopen03g038010 No alias PPR repeat 0.08 Orthogroups_2024-Update
Sopen04g008620 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen04g026190 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen04g036510 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen05g002740 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen06g022100 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen06g024560 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen06g035950 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen07g001950 No alias PPR repeat 0.06 Orthogroups_2024-Update
Sopen07g022420 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen07g026910 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g033130 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen09g035030 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen10g004380 No alias PPR repeat 0.08 Orthogroups_2024-Update
Sopen10g004410 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen10g030830 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.07 Orthogroups_2024-Update
Sopen11g001910 No alias PPR repeat family 0.08 Orthogroups_2024-Update
Sopen11g002630 No alias PPR repeat family 0.08 Orthogroups_2024-Update
Sopen11g009180 No alias PPR repeat 0.07 Orthogroups_2024-Update
Sopen11g026910 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 73 120
IPR002885 Pentatricopeptide_repeat 376 424
IPR002885 Pentatricopeptide_repeat 452 475
IPR002885 Pentatricopeptide_repeat 250 277
IPR002885 Pentatricopeptide_repeat 178 207
No external refs found!