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  5. Solyc12g042390

Solyc12g042390


Description : LOW QUALITY:Werner Syndrome-like exonuclease (AHRD V3.3 *** W9SHV7_9ROSA)


Gene families : OG_42_0000433 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000433_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g042390
Cluster HCCA clusters: Cluster_301

Target Alias Description ECC score Gene Family Method Actions
At3g62320 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.03 Orthogroups_2024-Update
Brara.J00123.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_35762g0010 No alias (at4g13870 : 99.8) Encodes a protein with homology to... 0.03 Orthogroups_2024-Update
Solyc08g078620 No alias LOW QUALITY:Werner Syndrome-like exonuclease (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
BP GO:0006139 nucleobase-containing compound metabolic process IEA InterProScan predictions
MF GO:0008408 3'-5' exonuclease activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR002562 3'-5'_exonuclease_dom 49 208
No external refs found!