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  5. Solyc12g044320

Solyc12g044320


Description : Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT3G50390.1)


Gene families : OG_42_0000343 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000343_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g044320
Cluster HCCA clusters: Cluster_274

Target Alias Description ECC score Gene Family Method Actions
A4A49_07643 No alias compass-like h3k4 histone methylase component wdr5a 0.03 Orthogroups_2024-Update
At1g47610 No alias F16N3.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SX94] 0.03 Orthogroups_2024-Update
At1g49450 No alias F13F21.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9XIB2] 0.03 Orthogroups_2024-Update
Brara.J00530.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G093079 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G368126 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G084700 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU4Hr1G012000.11 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU4Hr1G012010.5 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G017260.1 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_10429180g0010 No alias (at1g24130 : 233.0) Transducin/WD40 repeat-like... 0.02 Orthogroups_2024-Update
MA_137730g0010 No alias (at1g49450 : 217.0) Transducin/WD40 repeat-like... 0.03 Orthogroups_2024-Update
Pp1s110_33V6 No alias No description available 0.03 Orthogroups_2024-Update
Pp1s39_313V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.5G449800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G163600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G123000.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0016459 myosin complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 247 282
IPR001680 WD40_repeat 213 241
IPR001680 WD40_repeat 385 428
IPR001680 WD40_repeat 345 374
No external refs found!