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  5. Solyc12g055710

Solyc12g055710


Description : RING/U-box superfamily protein (AHRD V3.3 *** AT1G72310.1)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g055710
Cluster HCCA clusters: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
A4A49_15530 No alias ring-h2 finger protein atl54 0.04 Orthogroups_2024-Update
A4A49_30300 No alias ring-h2 finger protein atl54 0.02 Orthogroups_2024-Update
A4A49_61979 No alias ring-h2 finger protein atl78 0.03 Orthogroups_2024-Update
At5g17600 No alias RING-H2 finger protein ATL52... 0.02 Orthogroups_2024-Update
Bradi2g06870 No alias AtL5 0.03 Orthogroups_2024-Update
Brara.B00007.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Glyma.11G231400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G070640.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G028370.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU6Hr1G077610.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
LOC_Os09g38110 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
Seita.7G321400.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.003G288401.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.010G157300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Solyc12g094690 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 92 135
No external refs found!