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  5. Solyc12g056460

Solyc12g056460


Description : MADS box transcription factor (AHRD V3.3 *** C3PTE7_POPTO)


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g056460
Cluster HCCA clusters: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
A4A49_18078 No alias developmental protein sepallata 1 0.04 Orthogroups_2024-Update
Bradi1g08340 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
Bradi5g21700 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Brara.A00107.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.C01461.1 No alias MADS/AGL-type transcription factor 0.06 Orthogroups_2024-Update
Brara.G00861.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
Brara.I03959.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.01G020500 No alias AGAMOUS-like 21 0.04 Orthogroups_2024-Update
Glyma.02G185500 No alias AGAMOUS-like 18 0.05 Orthogroups_2024-Update
Glyma.05G227300 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
Glyma.08G034200 No alias AGAMOUS-like 29 0.03 Orthogroups_2024-Update
Glyma.08G310100 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.10G085100 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Glyma.10G240500 No alias AGAMOUS-like 42 0.04 Orthogroups_2024-Update
Glyma.18G105800 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.19G034500 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G008300.3 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
HORVU7Hr1G054390.1 No alias MADS/AGL-type transcription factor 0.05 Orthogroups_2024-Update
HORVU7Hr1G081070.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Seita.3G236800.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.04 Orthogroups_2024-Update
Sobic.010G221500.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Solyc02g089210 No alias MADS box transcription factor (AHRD V3.3 *** Q689E7_GENTR) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 86 171
No external refs found!