1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g056570

Solyc12g056570


Description : UPF0496 protein (AHRD V3.3 *** A0A0B2QAE4_GLYSO)


Gene families : OG_42_0001378 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g056570

Target Alias Description ECC score Gene Family Method Actions
A4A49_23166 No alias upf0496 protein 0.03 Orthogroups_2024-Update
Glyma.04G021800 No alias Protein of unknown function (DUF677) 0.02 Orthogroups_2024-Update
HORVU1Hr1G078420.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G503700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc04g081840 No alias LOW QUALITY:UPF0496 protein (AHRD V3.3 *** A0A0B2S5D8_GLYSO) 0.02 Orthogroups_2024-Update
Sopen03g004160 No alias Protein of unknown function (DUF677) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
MF GO:0019825 oxygen binding IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
BP GO:0032957 inositol trisphosphate metabolic process IEP Predicted GO
BP GO:0043647 inositol phosphate metabolic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0047325 inositol tetrakisphosphate 1-kinase activity IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0051765 inositol tetrakisphosphate kinase activity IEP Predicted GO
MF GO:0051766 inositol trisphosphate kinase activity IEP Predicted GO
MF GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity IEP Predicted GO
MF GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007749 DUF677 49 346
No external refs found!