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Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A0K9NUC3_ZOSMR)
Gene families : OG_42_0016240 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0016240_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc01g102790 | |
| Cluster | HCCA clusters: Cluster_105 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003729 | mRNA binding | IEP | Predicted GO |
| MF | GO:0004180 | carboxypeptidase activity | IEP | Predicted GO |
| MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | Predicted GO |
| CC | GO:0005849 | mRNA cleavage factor complex | IEP | Predicted GO |
| BP | GO:0006378 | mRNA polyadenylation | IEP | Predicted GO |
| BP | GO:0006743 | ubiquinone metabolic process | IEP | Predicted GO |
| BP | GO:0006744 | ubiquinone biosynthetic process | IEP | Predicted GO |
| MF | GO:0008236 | serine-type peptidase activity | IEP | Predicted GO |
| MF | GO:0008238 | exopeptidase activity | IEP | Predicted GO |
| MF | GO:0009916 | alternative oxidase activity | IEP | Predicted GO |
| MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Predicted GO |
| MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | Predicted GO |
| MF | GO:0016854 | racemase and epimerase activity | IEP | Predicted GO |
| MF | GO:0016855 | racemase and epimerase activity, acting on amino acids and derivatives | IEP | Predicted GO |
| MF | GO:0017171 | serine hydrolase activity | IEP | Predicted GO |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Predicted GO |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Predicted GO |
| MF | GO:0036361 | racemase activity, acting on amino acids and derivatives | IEP | Predicted GO |
| BP | GO:0042180 | cellular ketone metabolic process | IEP | Predicted GO |
| BP | GO:0042181 | ketone biosynthetic process | IEP | Predicted GO |
| BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
| MF | GO:0070008 | serine-type exopeptidase activity | IEP | Predicted GO |
| BP | GO:1901661 | quinone metabolic process | IEP | Predicted GO |
| BP | GO:1901663 | quinone biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 418 | 453 |
| IPR032867 | DYW_dom | 625 | 747 |
| IPR002885 | Pentatricopeptide_repeat | 526 | 549 |
| IPR002885 | Pentatricopeptide_repeat | 134 | 159 |
| IPR002885 | Pentatricopeptide_repeat | 297 | 319 |
| IPR002885 | Pentatricopeptide_repeat | 164 | 192 |
| IPR002885 | Pentatricopeptide_repeat | 354 | 401 |
| IPR002885 | Pentatricopeptide_repeat | 456 | 503 |
| IPR002885 | Pentatricopeptide_repeat | 63 | 109 |
| IPR002885 | Pentatricopeptide_repeat | 222 | 268 |
| No external refs found! |