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  5. Solyc12g088500

Solyc12g088500


Description : cyclin A3_5


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g088500
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
97411 No alias Cyclin A1;1 0.03 Orthogroups_2024-Update
At3g11520 No alias Cyclin-B1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q39069] 0.03 Orthogroups_2024-Update
Brara.A03403.1 No alias regulatory protein *(CYCB) of cell cycle 0.03 Orthogroups_2024-Update
Brara.H00423.1 No alias regulatory protein *(CYCA) of cell cycle 0.03 Orthogroups_2024-Update
Brara.H02508.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre03.g207900 No alias Cyclin A2;4 0.03 Orthogroups_2024-Update
Cre08.g370401 No alias CYCLIN B2;4 0.02 Orthogroups_2024-Update
Cre12.g511400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G159700 No alias Cyclin B2;3 0.03 Orthogroups_2024-Update
Glyma.04G043600 No alias Cyclin A3;1 0.08 Orthogroups_2024-Update
Glyma.04G071600 No alias mitotic-like cyclin 3B from Arabidopsis 0.03 Orthogroups_2024-Update
Glyma.06G000600 No alias Cyclin B2;3 0.03 Orthogroups_2024-Update
Glyma.13G031500 No alias Cyclin A1;1 0.04 Orthogroups_2024-Update
Glyma.14G154200 No alias Cyclin A1;1 0.03 Orthogroups_2024-Update
Glyma.17G204900 No alias mitotic-like cyclin 3B from Arabidopsis 0.03 Orthogroups_2024-Update
HORVU3Hr1G114440.2 No alias regulatory protein *(CYCA) of cell cycle 0.03 Orthogroups_2024-Update
HORVU5Hr1G018820.2 No alias regulatory protein *(CYCA) of cell cycle 0.03 Orthogroups_2024-Update
Kfl00112_0070 kfl00112_0070_v1.... (at1g80370 : 326.0) Cyclin A2;4 (CYCA2;4); CONTAINS... 0.04 Orthogroups_2024-Update
LOC_Os01g59120 No alias cyclin, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g47580 No alias cyclin, putative, expressed 0.04 Orthogroups_2024-Update
MA_28323g0010 No alias (at5g11300 : 355.0) mitotic-like cyclin, core cell cycle... 0.06 Orthogroups_2024-Update
MA_6619g0010 No alias (at1g44110 : 409.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.04 Orthogroups_2024-Update
MA_88982g0010 No alias (at5g11300 : 380.0) mitotic-like cyclin, core cell cycle... 0.06 Orthogroups_2024-Update
Mp2g25500.1 No alias cyclin (CYCA) 0.03 Orthogroups_2024-Update
PSME_00016804-RA No alias (at1g76310 : 214.0) core cell cycle genes; CYCLIN B2;4... 0.02 Orthogroups_2024-Update
PSME_00018743-RA No alias (p30278|ccnb2_medsa : 274.0) G2/mitotic-specific... 0.02 Orthogroups_2024-Update
PSME_00031489-RA No alias (at5g11300 : 338.0) mitotic-like cyclin, core cell cycle... 0.03 Orthogroups_2024-Update
PSME_00031546-RA No alias (at1g44110 : 410.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.03 Orthogroups_2024-Update
Pp1s147_164V6 No alias n-terminal domain containing expressed 0.03 Orthogroups_2024-Update
Sobic.009G181500.1 No alias regulatory protein *(CYCB) of cell cycle 0.03 Orthogroups_2024-Update
Solyc06g065680 No alias cyclin A2 0.03 Orthogroups_2024-Update
Sopen06g024200 No alias Cyclin, N-terminal domain 0.09 Orthogroups_2024-Update
Sopen12g030490 No alias Cyclin, N-terminal domain 0.06 Orthogroups_2024-Update
Sopen12g030500 No alias Cyclin, N-terminal domain 0.04 Orthogroups_2024-Update
evm.model.contig_554.3 No alias (q40671|ccnb2_orysa : 240.0) G2/mitotic-specific... 0.01 Orthogroups_2024-Update
evm.model.tig00000076.67 No alias (at1g44110 : 156.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0032957 inositol trisphosphate metabolic process IEP Predicted GO
BP GO:0043647 inositol phosphate metabolic process IEP Predicted GO
MF GO:0047325 inositol tetrakisphosphate 1-kinase activity IEP Predicted GO
MF GO:0051765 inositol tetrakisphosphate kinase activity IEP Predicted GO
MF GO:0051766 inositol trisphosphate kinase activity IEP Predicted GO
MF GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity IEP Predicted GO
MF GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006671 Cyclin_N 88 216
IPR004367 Cyclin_C-dom 219 341
No external refs found!