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  5. Solyc12g088530

Solyc12g088530


Description : cyclin A3.1


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g088530
Cluster HCCA clusters: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Brara.H00423.1 No alias regulatory protein *(CYCA) of cell cycle 0.06 Orthogroups_2024-Update
Cre08.g370401 No alias CYCLIN B2;4 0.01 Orthogroups_2024-Update
GRMZM2G017081 No alias mitotic-like cyclin 3B from Arabidopsis 0.02 Orthogroups_2024-Update
Glyma.04G043500 No alias Cyclin A3;1 0.04 Orthogroups_2024-Update
Glyma.04G043600 No alias Cyclin A3;1 0.04 Orthogroups_2024-Update
Glyma.04G071600 No alias mitotic-like cyclin 3B from Arabidopsis 0.04 Orthogroups_2024-Update
Glyma.13G031500 No alias Cyclin A1;1 0.05 Orthogroups_2024-Update
Glyma.14G087100 No alias Cyclin A3;1 0.04 Orthogroups_2024-Update
Kfl00112_0070 kfl00112_0070_v1.... (at1g80370 : 326.0) Cyclin A2;4 (CYCA2;4); CONTAINS... 0.03 Orthogroups_2024-Update
MA_28323g0010 No alias (at5g11300 : 355.0) mitotic-like cyclin, core cell cycle... 0.05 Orthogroups_2024-Update
MA_6619g0010 No alias (at1g44110 : 409.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.05 Orthogroups_2024-Update
MA_88982g0010 No alias (at5g11300 : 380.0) mitotic-like cyclin, core cell cycle... 0.03 Orthogroups_2024-Update
Mp2g25500.1 No alias cyclin (CYCA) 0.03 Orthogroups_2024-Update
PSME_00031489-RA No alias (at5g11300 : 338.0) mitotic-like cyclin, core cell cycle... 0.03 Orthogroups_2024-Update
PSME_00031546-RA No alias (at1g44110 : 410.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.02 Orthogroups_2024-Update
Potri.018G034100 No alias mitotic-like cyclin 3B from Arabidopsis 0.03 Orthogroups_2024-Update
Sopen03g039320 No alias Cyclin, N-terminal domain 0.03 Orthogroups_2024-Update
Sopen04g031900 No alias Cyclin, N-terminal domain 0.1 Orthogroups_2024-Update
Sopen06g024200 No alias Cyclin, N-terminal domain 0.07 Orthogroups_2024-Update
Sopen10g019800 No alias Cyclin, N-terminal domain 0.03 Orthogroups_2024-Update
Sopen12g030490 No alias Cyclin, N-terminal domain 0.04 Orthogroups_2024-Update
evm.model.contig_554.3 No alias (q40671|ccnb2_orysa : 240.0) G2/mitotic-specific... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
BP GO:0000724 double-strand break repair via homologous recombination IEP Predicted GO
BP GO:0000725 recombinational repair IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
MF GO:0005351 carbohydrate:proton symporter activity IEP Predicted GO
MF GO:0005402 carbohydrate:cation symporter activity IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0008643 carbohydrate transport IEP Predicted GO
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009200 deoxyribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Predicted GO
MF GO:0015293 symporter activity IEP Predicted GO
MF GO:0015294 solute:cation symporter activity IEP Predicted GO
MF GO:0015295 solute:proton symporter activity IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
BP GO:0019692 deoxyribose phosphate metabolic process IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046080 dUTP metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006671 Cyclin_N 88 216
IPR004367 Cyclin_C-dom 219 341
No external refs found!