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  5. Solyc12g088740

Solyc12g088740


Description : RING/U-box superfamily protein (AHRD V3.3 *** AT5G42940.2)


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g088740
Cluster HCCA clusters: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
447294 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
A4A49_05223 No alias putative e3 ubiquitin-protein ligase hip1 0.02 Orthogroups_2024-Update
A4A49_05482 No alias e3 ubiquitin-protein ligase mbr1 0.03 Orthogroups_2024-Update
A4A49_20046 No alias putative e3 ubiquitin-protein ligase hip1 0.02 Orthogroups_2024-Update
A4A49_22257 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Glyma.02G103300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G039800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G241900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G041000 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.06G234300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G158500 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.17G240800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Sobic.006G205100.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Solyc12g096420 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2) 0.04 Orthogroups_2024-Update
Sopen12g032260 No alias Ring finger domain 0.04 Orthogroups_2024-Update
evm.model.tig00000319.12 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004061 arylformamidase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005542 folic acid binding IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006569 tryptophan catabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
BP GO:0009063 cellular amino acid catabolic process IEP Predicted GO
BP GO:0009074 aromatic amino acid family catabolic process IEP Predicted GO
BP GO:0009310 amine catabolic process IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0019441 tryptophan catabolic process to kynurenine IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0042180 cellular ketone metabolic process IEP Predicted GO
BP GO:0042402 cellular biogenic amine catabolic process IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0042436 indole-containing compound catabolic process IEP Predicted GO
BP GO:0042537 benzene-containing compound metabolic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0046218 indolalkylamine catabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:0070189 kynurenine metabolic process IEP Predicted GO
MF GO:0072341 modified amino acid binding IEP Predicted GO
BP GO:1901606 alpha-amino acid catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 646 687
No external refs found!