Solyc12g088840


Description : LOW QUALITY:Calcium-binding EF-hand family protein, putative (AHRD V3.3 *** A0A061FAV4_THECC)


Gene families : OG_42_0001197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001197_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g088840
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
Bradi1g21095 No alias calmodulin 9 0.02 Orthogroups_2024-Update
LOC_Os09g28500 No alias EF hand family protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.002G126900 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update
Solyc12g088850 No alias LOW QUALITY:Calcium-binding EF-hand (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen04g032680 No alias EF hand 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 15 44
No external refs found!