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  5. Solyc12g088850

Solyc12g088850


Description : LOW QUALITY:Calcium-binding EF-hand (AHRD V3.3 *** A0A103YCM4_CYNCS)


Gene families : OG_42_0001197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001197_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g088850
Cluster HCCA clusters: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
HORVU6Hr1G078670.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os07g42730 No alias EF hand family protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g28510 No alias EF hand family protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.014G030100 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update
Potri.014G030200 No alias Calcium-binding EF-hand family protein 0.02 Orthogroups_2024-Update
Solyc12g088840 No alias LOW QUALITY:Calcium-binding EF-hand family protein,... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0003951 NAD+ kinase activity IEP Predicted GO
MF GO:0005342 organic acid transmembrane transporter activity IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006741 NADP biosynthetic process IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
MF GO:0015171 amino acid transmembrane transporter activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 67 85
IPR002048 EF_hand_dom 23 50
No external refs found!