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  5. Solyc12g096700

Solyc12g096700


Description : 60S ribosomal L9 (AHRD V3.3 *** A0A0B0N9P7_GOSAR)


Gene families : OG_42_0002219 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g096700
Cluster HCCA clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
269009 No alias Ribosomal protein L6 family 0.1 Orthogroups_2024-Update
A4A49_25505 No alias 60s ribosomal protein l9-1 0.03 Orthogroups_2024-Update
At4g10450 No alias 60S ribosomal protein L9-2... 0.07 Orthogroups_2024-Update
Bradi1g21850 No alias Ribosomal protein L6 family 0.11 Orthogroups_2024-Update
Bradi1g52040 No alias Ribosomal protein L6 family 0.05 Orthogroups_2024-Update
Bradi3g00640 No alias Ribosomal protein L6 family 0.07 Orthogroups_2024-Update
Brara.B02434.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.B02733.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.17 Orthogroups_2024-Update
Brara.I02353.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Brara.I02694.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Cre12.g494050 No alias Ribosomal protein L6 family 0.16 Orthogroups_2024-Update
Glyma.04G226500 No alias Ribosomal protein L6 family 0.03 Orthogroups_2024-Update
Glyma.04G226900 No alias Ribosomal protein L6 family 0.13 Orthogroups_2024-Update
Glyma.06G138400 No alias Ribosomal protein L6 family 0.07 Orthogroups_2024-Update
Glyma.06G138600 No alias Ribosomal protein L6 family 0.04 Orthogroups_2024-Update
HORVU0Hr1G006020.2 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
HORVU3Hr1G001140.5 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
HORVU7Hr1G002060.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Kfl00025_0220 kfl00025_0220_v1.1 (p30707|rl9_pea : 285.0) 60S ribosomal protein L9... 0.08 Orthogroups_2024-Update
MA_38141g0010 No alias (p49210|rl9_orysa : 311.0) 60S ribosomal protein L9 -... 0.07 Orthogroups_2024-Update
Mp4g24070.1 No alias component RPL9 of LSU proteome component 0.03 Orthogroups_2024-Update
Potri.001G454000 No alias Ribosomal protein L6 family 0.03 Orthogroups_2024-Update
Potri.011G148700 No alias Ribosomal protein L6 family 0.08 Orthogroups_2024-Update
Pp1s164_98V6 No alias 60s ribosomal protein l9 0.07 Orthogroups_2024-Update
Pp1s327_43V6 No alias 60s ribosomal protein l9 0.17 Orthogroups_2024-Update
Pp1s58_149V6 No alias 60s ribosomal protein l9 0.12 Orthogroups_2024-Update
Pp1s79_157V6 No alias 60s ribosomal protein l9 0.11 Orthogroups_2024-Update
Seita.1G003100.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.17 Orthogroups_2024-Update
Seita.4G005200.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.010G005300.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.17 Orthogroups_2024-Update
Sopen06g029670 No alias Ribosomal protein L6 0.19 Orthogroups_2024-Update
Sopen08g005520 No alias Ribosomal protein L6 0.06 Orthogroups_2024-Update
Sopen12g032530 No alias Ribosomal protein L6 0.19 Orthogroups_2024-Update
evm.model.contig_564.5 No alias (at4g10450 : 215.0) Ribosomal protein L6 family;... 0.23 Orthogroups_2024-Update
evm.model.tig00001532.12 No alias (p49210|rl9_orysa : 196.0) 60S ribosomal protein L9 -... 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
MF GO:0019843 rRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 12 90
IPR020040 Ribosomal_L6_a/b-dom 102 181
No external refs found!