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  5. Solyc12g098180

Solyc12g098180


Description : Vesicle-associated membrane protein, putative (AHRD V3.3 *** B9RWK6_RICCO)


Gene families : OG_42_0000264 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g098180
Cluster HCCA clusters: Cluster_302

Target Alias Description ECC score Gene Family Method Actions
Glyma.13G160500 No alias vesicle-associated membrane protein 713 0.03 Orthogroups_2024-Update
LOC_Os02g55990 No alias vesicle-associated membrane protein, putative, expressed 0.02 Orthogroups_2024-Update
Seita.3G407800.1 No alias R-type component *(VAMP721/VAMP722) of SNARE cell-plate... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008252 nucleotidase activity IEP Predicted GO
MF GO:0008253 5'-nucleotidase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009264 deoxyribonucleotide catabolic process IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR001388 Synaptobrevin 129 214
IPR010908 Longin_dom 32 111
No external refs found!