Solyc12g098340

Description : Pectinesterase (AHRD V3.3 *** K4DHK8_SOLLC)

Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc12g098340

Target	Alias	Description	ECC score	Gene Family Method
Brara.B00839.1	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Brara.F03103.1	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Brara.J02514.1	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
GRMZM2G422631	No alias	pectinesterase 11	0.02	Orthogroups_2024-Update
Glyma.01G068100	No alias	Pectin lyase-like superfamily protein	0.01	Orthogroups_2024-Update
HORVU2Hr1G032220.4	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
HORVU7Hr1G076580.1	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
LOC_Os01g44340	No alias	pectinesterase, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os01g53990	No alias	pectinesterase, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os09g39760	No alias	pectinesterase, putative, expressed	0.03	Orthogroups_2024-Update
PSME_00020051-RA	No alias	(at5g19730 : 262.0) Pectin lyase-like superfamily...	0.02	Orthogroups_2024-Update
Potri.004G156300	No alias	pectinesterase 11	0.04	Orthogroups_2024-Update
Potri.008G104800	No alias	Pectin lyase-like superfamily protein	0.04	Orthogroups_2024-Update
Pp1s23_141V6	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
Seita.3G174200.1	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Seita.5G027700.1	No alias	pectin methylesterase	0.04	Orthogroups_2024-Update
Sobic.002G138400.1	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Sobic.003G231500.1	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Solyc04g080530	No alias	Pectinesterase (AHRD V3.3 *** K4BVD2_SOLLC)	0.04	Orthogroups_2024-Update
Solyc07g065360	No alias	Pectinesterase (AHRD V3.3 *** K4CHL4_SOLLC)	0.03	Orthogroups_2024-Update
Solyc09g091730	No alias	Pectinesterase (AHRD V3.3 *** K4CWJ9_SOLLC)	0.03	Orthogroups_2024-Update
Solyc12g099230	No alias	Pectinesterase (AHRD V3.3 *** K4DHU4_SOLLC)	0.06	Orthogroups_2024-Update
Sopen07g033560	No alias	Pectinesterase	0.03	Orthogroups_2024-Update
Sopen09g034620	No alias	Pectinesterase	0.03	Orthogroups_2024-Update
Sopen10g033270	No alias	Pectinesterase	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	InterProScan predictions
BP	GO:0042545	cell wall modification	IEA	InterProScan predictions
CC	GO:0044464	cell part	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Predicted GO
MF	GO:0004601	peroxidase activity	IEP	Predicted GO
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Predicted GO
MF	GO:0005094	Rho GDP-dissociation inhibitor activity	IEP	Predicted GO
BP	GO:0006979	response to oxidative stress	IEP	Predicted GO
MF	GO:0016168	chlorophyll binding	IEP	Predicted GO
MF	GO:0016209	antioxidant activity	IEP	Predicted GO
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predicted GO
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predicted GO
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Predicted GO
MF	GO:0019825	oxygen binding	IEP	Predicted GO
MF	GO:0030570	pectate lyase activity	IEP	Predicted GO
BP	GO:0032957	inositol trisphosphate metabolic process	IEP	Predicted GO
BP	GO:0043647	inositol phosphate metabolic process	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
MF	GO:0046983	protein dimerization activity	IEP	Predicted GO
MF	GO:0047325	inositol tetrakisphosphate 1-kinase activity	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0051536	iron-sulfur cluster binding	IEP	Predicted GO
MF	GO:0051540	metal cluster binding	IEP	Predicted GO
MF	GO:0051765	inositol tetrakisphosphate kinase activity	IEP	Predicted GO
MF	GO:0051766	inositol trisphosphate kinase activity	IEP	Predicted GO
MF	GO:0052725	inositol-1,3,4-trisphosphate 6-kinase activity	IEP	Predicted GO
MF	GO:0052726	inositol-1,3,4-trisphosphate 5-kinase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	34	319

External Links

No external refs found!

Solyc12g098340

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation